- National Library: The National Library of Japan that houses The Universe of the Four Gods in Fushigi Yuugi.
- Yotsubadai High School: Miaka and Yui's high school and a major location in the later chapters and OVAs.
- Daichu Prep School: A preparatory school Miaka attends to pass her entrance exams.
- Jonan Academy: The top high school in Tokyo. Academically rigorous and competitive, Miaka's mother pushes her daughter to study relentlessly to pass its entrance exam. Miaka eventually earns a spot at the prestigious school but decides to go to Yotsubadai with Yui.
- Cafe Paradox: A small cafe in Shibuya. This is the meeting spot Keisuke and Tetsuya decide on when Tamahome accidently ends up in their world. Taka Sukunami is also employed here as a waiter until he is subsequently fired after defending Miaka and Yui from pushy Hokuō boys.
- Hokuō High School: A posh high school briefly referenced in Chapter 78. It is presumably attended by international Scandinavian students who wear designer uniforms.